Add durable coding-agent session runtimes with locking, protocol projection, and JSONL persistence. Remove the obsolete legacy server implementation and dependency cycle.
Bump TypeBox to 1.3.7 so compiled validators guard array-specific keywords when null is accepted, and cover tool-argument validation with a regression test.
Breaking for extensions: TypeBox 1.3 removes deprecated APIs including Type.Base, Type.Awaited, Type.Promise, Type.AsyncIterator, Type.Iterator, Type.Options, and Value.Mutate. Extensions using these through Pi's bundled TypeBox aliases must migrate to supported TypeBox APIs.
Fixes#7003
This PR:
- Adds retainedTail to compaction entries in the new agent harness so we don't have to walk up the tree for the 2000 tokens before compaction,
- Changes getPathToRoot to getPathToRootOrCompaction to only load until last compaction, as unnecessary to access all nodes where it is called,
- Adds a SQLite storage backend, in a separate packages/session-backend-sqlite, with a migration system and schemas as per on-site discussions: sessions to match session header messages (except for metadata, which I couldn't understand what it's used for or where it gets written, so I omitted it), session_entries for shared entry types as columns plus payload as a json for what remains, session_sequences to represent the append-only, serialized nature of the jsonl files, branch_entries to attribute nodes to branches (relationship one-to-many), and session_materialized with the session info (see /session in TUI) to act as a "cache" or quick-access for costs, message count, token info, labels, session name, and model-thinking-level config (e.g. for fast resume).
- This is compatible with the new agent harness Session abstraction.
